Re: crystallography and molecular dynamics packages in synaptic
Originally Posted by
nkamesh
hi
I am a newbie to the linux world and recently installed ubuntu. Its been only a month since i joined graduate school and hoping to carry out research in crystallography.
I used ubuntu to install gromacs 3.3-1.5 using the synaptic and it worked like charm. I would however want the recent gromacs 3.3.3 version to be included in the repositories. That would be immensely beneficial.
Also, I have not been able to install the CCP4 crystallography suite of programs (
www.ccp4.ac.uk) smoothly eventhough when I have all the dependent files installed. Is it possible that the ubuntu version be uploaded in the repositories. For example the ccp4mg, has some bugs when run in ubuntu.
it would be great if both the gromacs 3.3.3 and the ccp4 suite are tested in ubuntu and uploaded in the repos.
are there any crystallographers using ubuntu, that successfully installed the ccp4 suite (including the COOT package) ?.
Do you have any info on what specifically gromacs 3.3.3 would have over 3.3.2 which is what is scheduled to be released in Ubuntu 8.04? If we have a compelling reason we can file a Feature Freeze exception to try to get it in.
ccp4 is unfortunately not free enough to go into the usual Ubuntu repos. It probably would qualify for the Multiverse repo, which is used for non-free software, though.
-LaserJock
"That's all very well in practice, but will it ever work in theory?" -- G. Hill
"A tidy laboratory means a lazy chemist." -- Jöns Jacob Berzelius
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