Hello,
I'm planning to build a machine to do some bioinformatics and I had a few questions about Ubuntu.
We need a lot of RAM, I'm thinking of starting with 32-64 GB. It looks like when going above 32GB, non-server motherboards tend to be flaky and RDIMM memory should be used. As a result, I'm looking at a server board and CPU like the Supermicro X9SRA and an LGA 2011 E5-26xx xeon of some sort, with RDIMMs.
My questions are if 'regular flavor' Ubuntu 64 will work successfully with this board and CPU, and if 'regular flavor' Ubuntu 64 will support more than 32GB of RAM. (I've seen 1TB and 32GB as the limit for what it will support). (The alternative probably being Ubuntu server version, which I haven't used before)
Any other advice would be welcome as well.
Planning on using this to assemble ~120million reads, which is essentially taking 120million or so 100 character strings (90gb of data when stored in chars? roughly) and trying to find somewhat random overlap places between them all. It will be used for a few tasks of this nature; the best data I've seen is that 32GB is more or less a requirement and anything above really makes a difference.
Thanks
Bookmarks