So after the last update, for some reason apache is no longer working with my linked folders.
Here is the problem:

lrwxrwxrwx dictionary -> /home/****/dictionary
drwxr-xr-x downloader

These are my two folders (i am the owner on both and on the containing files), on is the link the other one is a real folder. The real one I can access and the link I can not.

I have the permissions inside the folders correct:
total 68
drwxr-xr-x .
drwxr-xr-x ..
drwxr-xr-x cache
drwxr-xr-x classes
-rwxr-xr-x config.php
drwxr-xr-x configs

total 172
drwxr-xr-x .
drwxrwxrwx ..
-rwxr-xr-x download.log
-rwxr-xr-x index.php
-rwxr-xr-x links.php

And the real folder that is linked also has the right privileges:
drwxr-xr-x dictionary

And now i don't understand why is this not working, and it used to work before.