Hi,
A somewhat hackish solution that seemed to solve this problem for me on two desktops that I upgraded was the following:
$ sudo bash
# cd /usr/share/ati
# export FORCE_ATI_UNINSTALL="yes"
# ./fglrx-uninstall.sh
# exit
After this I could resume installing the fglrx package through synaptic or jockey (as you like). Note however that the previous error message by synaptic said that this was not recommended, but it's worked well for me.
EDIT: never mind, I see now that the instructions above are dealing with this in a better way



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