Re: Empathy removed by update
As others have said, the problem stems from your using the Empathy PPA. When a PPA breaks dependencies and a dist-upgrade asks to remove packages that should obviously not be removed (e.g. Empathy, in your case), you should either not proceed with the upgrade, or temporarily remove the PPA from your sources.
Since you already went ahead with the upgrade, I recommend you comment the Empathy PPA in your sources.list, reinstall what is needed, then re-add the PPA but don't do dist-upgrades (only upgrades) until the devs solve their dependency problem and the PPA is back to a consistent state.
This is the first age that's paid much attention to the future, which is a little ironic since we may not have one.
-- Arthur C. Clarke
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