VGCats linked this game (i guess it came out of GDC) and it looks like it could be very interesting...
http://achrongame.com/
In the faq they mention porting it to Linux.
http://achrongame.com/achron_faq.html#3
Check out these two videos especially the second one...
http://www.rockpapershotgun.com/2009/03/27/epochal-achron-meta-time-strategy/
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