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What did I miss? Where exactly does it offer that option?

I need to install GRUB to /boot instead of MBR. I tried the (K)Ubuntu alternate discs (I need encryption) in a VM and couldn't find a way to convince the installer... Is there a way to do that?
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Try Anki: http://ichi2.net/anki/

It's a cross-platform qt app and has deb packages ready.
Anki is quite feature rich, some things I haven't seen in other such programs so far, give it a spin....