bennett172
November 11th, 2008, 03:47 PM
I recently applied the latest 8.04 patch and Matlab 2008a/2008b and MIPAV (http://mipav.cit.nih.gov/) started crashing. Both require Sun's java jvm. The error message for both programs is the same (as follows). I upgraded to 8.10, but the problem remains.
Any help would be greatly appreciated.
-Bennett
#8 [0x7fd7d8fd9878]
#
# An unexpected error has been detected by Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00007fd7dda9b5af, pid=10095, tid=1084684624
#
# Java VM: Java HotSpot(TM) 64-Bit Server VM (10.0-b19 mixed mode linux-amd64)
# Problematic frame:
# C [libc.so.6+0x315af] catgets+0x1f
#
# An error report file with more information is saved as:
# /usr/local/matlab-2008b/hs_err_pid10095.log
#
# If you would like to submit a bug report, please visit:
# http://java.sun.com/webapps/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
Aborted
Another note: I have always had the following error message on startup (and it is still there), but it has never caused any problems:
#0 /usr/lib/libxcb-xlib.so.0 [0x7fd7915b29fc]
#1 /usr/lib/libxcb-xlib.so.0(xcb_xlib_unlock+0x24) [0x7fd7915b2ab4]
#2 /usr/lib/libX11.so.6(_XReply+0x268) [0x7fd79202f698]
#3 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792c16096]
#4 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc2bfb]
#5 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc2ecd]
#6 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so(Java_sun_awt_X11GraphicsEnvironment_ini tDisplay+0x12) [0x7fd792bc3142]
#7 [0x7fd7d8fd9878]
Locking assertion failure. Backtrace:
#0 /usr/lib/libxcb-xlib.so.0 [0x7fd7915b29fc]
#1 /usr/lib/libxcb-xlib.so.0(xcb_xlib_lock+0x17) [0x7fd7915b2b77]
#2 /usr/lib/libX11.so.6 [0x7fd79202e8c0]
#3 /usr/lib/libX11.so.6(XGetVisualInfo+0x2e) [0x7fd79202508e]
#4 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc1f25]
#5 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc2179]
#6 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc2f6f]
#7 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so(Java_sun_awt_X11GraphicsEnvironment_ini tDisplay+0x12) [0x7fd792bc3142]
Any help would be greatly appreciated.
-Bennett
#8 [0x7fd7d8fd9878]
#
# An unexpected error has been detected by Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00007fd7dda9b5af, pid=10095, tid=1084684624
#
# Java VM: Java HotSpot(TM) 64-Bit Server VM (10.0-b19 mixed mode linux-amd64)
# Problematic frame:
# C [libc.so.6+0x315af] catgets+0x1f
#
# An error report file with more information is saved as:
# /usr/local/matlab-2008b/hs_err_pid10095.log
#
# If you would like to submit a bug report, please visit:
# http://java.sun.com/webapps/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
Aborted
Another note: I have always had the following error message on startup (and it is still there), but it has never caused any problems:
#0 /usr/lib/libxcb-xlib.so.0 [0x7fd7915b29fc]
#1 /usr/lib/libxcb-xlib.so.0(xcb_xlib_unlock+0x24) [0x7fd7915b2ab4]
#2 /usr/lib/libX11.so.6(_XReply+0x268) [0x7fd79202f698]
#3 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792c16096]
#4 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc2bfb]
#5 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc2ecd]
#6 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so(Java_sun_awt_X11GraphicsEnvironment_ini tDisplay+0x12) [0x7fd792bc3142]
#7 [0x7fd7d8fd9878]
Locking assertion failure. Backtrace:
#0 /usr/lib/libxcb-xlib.so.0 [0x7fd7915b29fc]
#1 /usr/lib/libxcb-xlib.so.0(xcb_xlib_lock+0x17) [0x7fd7915b2b77]
#2 /usr/lib/libX11.so.6 [0x7fd79202e8c0]
#3 /usr/lib/libX11.so.6(XGetVisualInfo+0x2e) [0x7fd79202508e]
#4 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc1f25]
#5 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc2179]
#6 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so [0x7fd792bc2f6f]
#7 /usr/local/matlab-2008b/sys/java/jre/glnxa64/jre/lib/amd64/motif21/libmawt.so(Java_sun_awt_X11GraphicsEnvironment_ini tDisplay+0x12) [0x7fd792bc3142]