paulmilliken
May 26th, 2010, 03:48 AM
To install the xcms package in R on Lucid Lynx (10.04) follow these steps (assuming R is already installed):
1. In a bash shell type the following to install the necessary dependencies
sudo apt-get install libnetcdf-dev build-essential
2. Download the latest xcms_*.*.*.tar.gz file from http://www.bioconductor.org/packages/release/bioc/html/xcms.html
3. Navigate to the directory where you downloaded the file (eg. type
cd ~/Downloads if that is where you saved it)
4. Run R as root by typing
sudo R
5. At the R prompt, type:
install.packages("./xcms_1.23.1.tar.gz")
1. In a bash shell type the following to install the necessary dependencies
sudo apt-get install libnetcdf-dev build-essential
2. Download the latest xcms_*.*.*.tar.gz file from http://www.bioconductor.org/packages/release/bioc/html/xcms.html
3. Navigate to the directory where you downloaded the file (eg. type
cd ~/Downloads if that is where you saved it)
4. Run R as root by typing
sudo R
5. At the R prompt, type:
install.packages("./xcms_1.23.1.tar.gz")