PDA

View Full Version : [ubuntu] folding at home not working



steve101101
April 24th, 2009, 02:39 AM
It seems for some reason that it doesn't want to start actually folding. What is wrong. I have tried to install using a variety of directions and all don't work. I really want to do this but it doesn't work. please help.




--- Opening Log file [April 24 01:06:16]


# Linux Console Edition ################################################## #####
################################################## #############################

Folding@Home Client Version 6.02

http://folding.stanford.edu

################################################## #############################
################################################## #############################

Launch directory: /home/steven/foldingathome/CPU3
Executable: /home/steven/foldingathome/CPU3/fah6
Arguments: -verbosity 9

[01:06:16] - Ask before connecting: No
[01:06:16] - User name: smarcus3 (Team 57391)
[01:06:16] - User ID not found locally
[01:06:16] + Requesting User ID from server
[01:06:16] - Getting ID from AS:
[01:06:16] Connecting to http://assign.stanford.edu:8080/
[01:06:16] Posted data.
[01:06:16] Initial: 5A30; - Received User ID = 305A66A925A2E016
[01:06:16] - Machine ID: 3
[01:06:16]
[01:06:16] Work directory not found. Creating...
[01:06:16] Could not open work queue, generating new queue...
[01:06:16] - Autosending finished units...
[01:06:16] Trying to send all finished work units
[01:06:16] + No unsent completed units remaining.
[01:06:16] - Autosend completed
[01:06:16] - Preparing to get new work unit...
[01:06:16] + Attempting to get work packet
[01:06:16] - Detect CPU. Vendor: GenuineIntel, Family: 6, Model: 15, Stepping: 11
[01:06:16] - Connecting to assignment server
[01:06:16] Connecting to http://assign.stanford.edu:8080/
[01:06:16] Posted data.
[01:06:16] Initial: 40AB; - Successful: assigned to (171.64.122.138).
[01:06:16] + News From Folding@Home: Welcome to Folding@Home
[01:06:17] Loaded queue successfully.
[01:06:17] Connecting to http://171.64.122.138:8080/
[01:06:19] Posted data.
[01:06:19] Initial: 0000; - Receiving payload (expected size: 1171211)
[01:06:21] - Downloaded at ~571 kB/s
[01:06:21] - Averaged speed for that direction ~571 kB/s
[01:06:21] + Received work.
[01:06:21] + Closed connections
[01:06:21]
[01:06:21] + Processing work unit
[01:06:21] Core required: FahCore_a0.exe
[01:06:21] Core not found.
[01:06:21] - Core is not present or corrupted.
[01:06:21] - Attempting to download new core...
[01:06:21] + Downloading new core: FahCore_a0.exe
[01:06:21] Downloading core (/~pande/Linux/x86/Core_a0.fah from www.stanford.edu)
[01:06:21] Initial: AFDE; + 10240 bytes downloaded
[01:06:21] Initial: 05BE; + 20480 bytes downloaded
[01:06:21] Initial: 4164; + 30720 bytes downloaded
[01:06:21] Initial: 6802; + 40960 bytes downloaded
[01:06:21] Initial: 2F56; + 51200 bytes downloaded
[01:06:21] Initial: 4D60; + 61440 bytes downloaded
[01:06:21] Initial: 1898; + 71680 bytes downloaded
[01:06:21] Initial: F160; + 81920 bytes downloaded
[01:06:21] Initial: 009D; + 92160 bytes downloaded
[01:06:21] Initial: EA70; + 102400 bytes downloaded
[01:06:21] Initial: F231; + 112640 bytes downloaded
[01:06:21] Initial: 8C5D; + 122880 bytes downloaded
[01:06:21] Initial: 0A32; + 133120 bytes downloaded
[01:06:21] Initial: EDA1; + 143360 bytes downloaded
[01:06:21] Initial: 37FF; + 153600 bytes downloaded
[01:06:21] Initial: 9CA6; + 163840 bytes downloaded
[01:06:21] Initial: AE59; + 174080 bytes downloaded
[01:06:21] Initial: 298D; + 184320 bytes downloaded
[01:06:21] Initial: 2779; + 194560 bytes downloaded
[01:06:21] Initial: B02C; + 204800 bytes downloaded
[01:06:21] Initial: 4D34; + 215040 bytes downloaded
[01:06:21] Initial: 35DB; + 225280 bytes downloaded
[01:06:21] Initial: D8D6; + 235520 bytes downloaded
[01:06:21] Initial: 84E0; + 245760 bytes downloaded
[01:06:21] Initial: D38B; + 256000 bytes downloaded
[01:06:21] Initial: CFC3; + 266240 bytes downloaded
[01:06:21] Initial: A7E6; + 276480 bytes downloaded
[01:06:22] Initial: 3061; + 286720 bytes downloaded
[01:06:22] Initial: E5E4; + 296960 bytes downloaded
[01:06:22] Initial: E90C; + 307200 bytes downloaded
[01:06:22] Initial: 945A; + 317440 bytes downloaded
[01:06:22] Initial: 8737; + 327680 bytes downloaded
[01:06:22] Initial: 4966; + 337920 bytes downloaded
[01:06:22] Initial: 8A31; + 348160 bytes downloaded
[01:06:22] Initial: B556; + 358400 bytes downloaded
[01:06:22] Initial: 37A6; + 368640 bytes downloaded
[01:06:22] Initial: E2EB; + 378880 bytes downloaded
[01:06:22] Initial: 0809; + 389120 bytes downloaded
[01:06:22] Initial: 290B; + 399360 bytes downloaded
[01:06:22] Initial: 3BBA; + 409600 bytes downloaded
[01:06:22] Initial: 073A; + 419840 bytes downloaded
[01:06:22] Initial: 7811; + 430080 bytes downloaded
[01:06:22] Initial: 170D; + 440320 bytes downloaded
[01:06:22] Initial: 233C; + 450560 bytes downloaded
[01:06:22] Initial: 973C; + 460800 bytes downloaded
[01:06:22] Initial: 900A; + 471040 bytes downloaded
[01:06:22] Initial: E5FA; + 481280 bytes downloaded
[01:06:22] Initial: 0E8D; + 491520 bytes downloaded
[01:06:22] Initial: 4D27; + 501760 bytes downloaded
[01:06:22] Initial: 1648; + 512000 bytes downloaded
[01:06:22] Initial: D8E0; + 522240 bytes downloaded
[01:06:22] Initial: 8D92; + 532480 bytes downloaded
[01:06:22] Initial: 508B; + 542720 bytes downloaded
[01:06:22] Initial: 8633; + 552960 bytes downloaded
[01:06:22] Initial: 88D8; + 563200 bytes downloaded
[01:06:22] Initial: E830; + 573440 bytes downloaded
[01:06:22] Initial: B49D; + 583680 bytes downloaded
[01:06:22] Initial: D550; + 593920 bytes downloaded
[01:06:22] Initial: A360; + 604160 bytes downloaded
[01:06:22] Initial: 4264; + 614400 bytes downloaded
[01:06:22] Initial: 76B8; + 624640 bytes downloaded
[01:06:22] Initial: 7FEA; + 634880 bytes downloaded
[01:06:22] Initial: F7B9; + 645120 bytes downloaded
[01:06:22] Initial: A841; + 655360 bytes downloaded
[01:06:22] Initial: 8CCE; + 665600 bytes downloaded
[01:06:22] Initial: 86A5; + 675840 bytes downloaded
[01:06:22] Initial: B7D7; + 686080 bytes downloaded
[01:06:22] Initial: 154D; + 696320 bytes downloaded
[01:06:22] Initial: A7E9; + 706560 bytes downloaded
[01:06:22] Initial: F64A; + 716800 bytes downloaded
[01:06:22] Initial: 073C; + 727040 bytes downloaded
[01:06:22] Initial: A499; + 737280 bytes downloaded
[01:06:22] Initial: B9AB; + 747520 bytes downloaded
[01:06:22] Initial: 0904; + 757760 bytes downloaded
[01:06:22] Initial: 0CB0; + 768000 bytes downloaded
[01:06:22] Initial: 9621; + 778240 bytes downloaded
[01:06:22] Initial: 1799; + 788480 bytes downloaded
[01:06:22] Initial: 3DF9; + 798720 bytes downloaded
[01:06:22] Initial: 37D3; + 808960 bytes downloaded
[01:06:22] Initial: 9F3F; + 819200 bytes downloaded
[01:06:23] Initial: 556A; + 829440 bytes downloaded
[01:06:23] Initial: DF5E; + 839680 bytes downloaded
[01:06:23] Initial: 68D1; + 849920 bytes downloaded
[01:06:23] Initial: A41E; + 860160 bytes downloaded
[01:06:23] Initial: 0FB1; + 870400 bytes downloaded
[01:06:23] Initial: 6A40; + 880640 bytes downloaded
[01:06:23] Initial: DA22; + 890880 bytes downloaded
[01:06:23] Initial: 9943; + 901120 bytes downloaded
[01:06:23] Initial: 234F; + 911360 bytes downloaded
[01:06:23] Initial: 2A50; + 921600 bytes downloaded
[01:06:23] Initial: 7ACA; + 931840 bytes downloaded
[01:06:23] Initial: EE91; + 942080 bytes downloaded
[01:06:23] Initial: CD3E; + 952320 bytes downloaded
[01:06:23] Initial: E87D; + 962560 bytes downloaded
[01:06:23] Initial: 725F; + 972800 bytes downloaded
[01:06:23] Initial: AF9E; + 980952 bytes downloaded
[01:06:23] Verifying core Core_a0.fah...
[01:06:23] Signature is VALID
[01:06:23]
[01:06:23] Trying to unzip core FahCore_a0.exe
[01:06:23] Decompressed FahCore_a0.exe (3055460 bytes) successfully
[01:06:23] + Core successfully engaged
[01:06:44]
[01:06:44] + Processing work unit
[01:06:44] Core required: FahCore_a0.exe
[01:06:44] Core found.
[01:06:44] Working on Unit 01 [April 24 01:06:44]
[01:06:44] + Working ...
[01:06:44] - Calling './FahCore_a0.exe -dir work/ -suffix 01 -checkpoint 15 -verbose -lifeline 4959 -version 602'

[01:06:44]
[01:06:44] *------------------------------*
[01:06:44] Folding@Home Gromacs 3.3 Core
[01:06:44] Version 1.92 (April 17. 2007)
[01:06:44]
[01:06:44] Preparing to commence simulation
[01:06:44] - Looking at optimizations...
[01:06:44] - Created dyn
[01:06:44] - Files status OK
[01:06:45] - Expanded 1170699 -> 6252409 (decompressed 534.0 percent)
[01:06:45] - Starting from initial work packet
[01:06:45]
[01:06:45] Project: 782 (Run 40, Clone 62, Gen 2)
[01:06:45]
[01:06:45] Assembly optimizations on if available.
[01:06:45] Entering M.D.
[01:06:51] Protein: Mini chaperonin
[01:06:51] Writing local files
[01:06:51] Extra 3DNow boost OK.
[01:06:51] Extra SSE boost OK.
[01:06:52] Writing local files
[01:06:52] Completed 0 out of 500000 steps (0 percent)
[01:21:52] Timered checkpoint triggered.
[01:36:52] Timered checkpoint triggered.

steve101101
April 24th, 2009, 02:50 AM
it seems to be running very slow and there is different data in each of the 4 cpus logs. is this common. it only seems that 2 are folding.

this is how the other 2 look (CPU 1 and 2 look like this)





--- Opening Log file [April 24 00:57:36]


# Linux Console Edition ################################################## #####
################################################## #############################

Folding@Home Client Version 6.02

http://folding.stanford.edu

################################################## #############################
################################################## #############################

Launch directory: /home/steven/foldingathome/CPU1
Executable: /home/steven/foldingathome/CPU1/fah6
Arguments: -verbosity 9 -configonly

[00:57:36] Configuring Folding@Home...


[00:57:56] - Ask before connecting: No
[00:57:56] - User name: smarcus3 (Team 57391)
[00:57:56] - User ID not found locally
[00:57:56] + Requesting User ID from server
[00:57:56] - Getting ID from AS:
[00:57:56] Connecting to http://assign.stanford.edu:8080/
[00:57:56] Posted data.
[00:57:56] Initial: C31D; - Received User ID = 1DC315BD5B16F803
[00:57:56] - Machine ID: 1
[00:57:56]
[00:57:56] -configonly flag given, so exiting.


--- Opening Log file [April 24 01:06:16]


# Linux Console Edition ################################################## #####
################################################## #############################

Folding@Home Client Version 6.02

http://folding.stanford.edu

################################################## #############################
################################################## #############################

Launch directory: /home/steven/foldingathome/CPU1
Executable: /home/steven/foldingathome/CPU1/fah6
Arguments: -verbosity 9

[01:06:16] - Ask before connecting: No
[01:06:16] - User name: smarcus3 (Team 57391)
[01:06:16] - User ID: 1DC315BD5B16F803
[01:06:16] - Machine ID: 1
[01:06:16]
[01:06:16] Work directory not found. Creating...
[01:06:16] Could not open work queue, generating new queue...
[01:06:16] - Preparing to get new work unit...
[01:06:16] - Autosending finished units...
[01:06:16] + Attempting to get work packet
[01:06:16] Trying to send all finished work units
[01:06:16] - Detect CPU.[01:06:16] + No unsent completed units remaining.
Vendor: GenuineIntel, Family: 6, Model: 15, Stepping: 11
[01:06:16] - Autosend completed

steve101101
April 24th, 2009, 03:00 AM
i also though that folding at home used to be much quicker. Its taking approx 30+ mins per step. is this common?

steve101101
April 24th, 2009, 05:38 AM
bump

swoody
July 3rd, 2009, 02:37 AM
steve101101: Well, hopefully you've found a solution to the issue you are having. If not, can you please elaborate on your system setup for us? Do you have multiple CPU's or do you have a multiple-core CPU? Also, how did you install F@H, and what command are you using to start it? Any other details you can offer would be great, too.

If you'd like to get some real-time help, so we might be able to walk you through all your setup, or if you just want to come by and hang out, and talk folding, please come check out Ubuntu's Folding at Home Team on our IRC channel at #ubuntu-folding on the FreeNode network!! :D