Lets see what is where:
Post the link to the BootInfo report that this creates. Is part of Boot-Repair:
Boot Repair -Also handles LVM, GPT, separate /boot and UEFI dual boot.:
You can repair many boot issues with this or 'Create BootInfo' report (Other Options) & post the link it creates, so we can see your exact configuration and diagnose advanced problems.
Install in Ubuntu liveCD or USB or Full RepairCD with Boot-Repair (for newer computers)