Ok, I've learned my lesson here.

I haven't found yet a Linux PDF reader app that would highlight, bookmark, notes etc so I normally install Foxit Phantom which I own a copy. I go and download it from the site, install it via wine and during the install my background went blue and no icons were there. I find out that most of my files/folders were gone. Is this even possible in wine or some freakish accident?

http://cdn01.foxitsoftware.com/pub/f..._enu_Setup.exe <-- is where I normally get the file.