Snort will run on Windows.
This kind of activity is gray hat stuff at best and is not really supported on these forums.
First you are asking about a windows server -> we would ask you to ask for windows support on a windows forums.
Second you are not asking for support on getting any particular application running, you are asking for cracking tools. Honestly I am not sure what is included in Backtrack, but I would be surprised if it did not have tools.
If nothing else , port scan your server, a port scan is easy to perform and should, IMO, be detected.
Otherwise Google search your question
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