the encryption on your home directory might be effecting this.
but i dont think any of the config files were actually stored in the /home/USER directory.
either way i took down this setup because the daemon that was *supposed* to can rss feeds for new items wasn't working.
I reformatted and installed 10.04 and went back to my old Vuze + Scane RSS setup which *is* working flawlessly
I am sorry i couldn't be of much help.
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