The hidden files & folders (start with a dot) contain the configurations for all your installed applications.
For most of the applications you reinstalled you're better off with the fresh settings that come with a new install.
If you decide to re-install again you might try only copying the non-hidden folders from your old home directory.
If there is some application you really fine tuned that you don't want to re-configure, just copy the hidden folder or file for that application.
jdb
Bookmarks