Wine is a terminal application, there is no GUI. There is a GUI for the Wine configuration app and the uninstaller, but for installing applications and just using Wine, there is no GUI at all. There are some third-party GUI front ends for Wine, like Play On Linux and Wine-Doors.
As for your missing menu shortcuts, look for a Wine entry in /home/<user name>/.config/menus/applications.menu. It should have a <Deleted/> on the end of it like this:
Code:
<Name>wine-wine</Name>
<DirectoryDir>/home/<username>/.local/share/desktop-directories</DirectoryDir>
<Deleted/>
Just remove the <Deleted/> and the menu will come back.
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