You should be ok. If you have any doubts, just run fsck from a livecd or force it on a reboot with this:
Code:sudo touch /forcefsck
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Thanks for all your help huys - it's now working fine!
I've even managed to use my Pi as a wireless dnla streamer, using this guide:
http://blog.scphillips.com/2013/01/u...dia-streaming/
I'm now just in the middle of the epic task of transfering all the videos from an external drive to my servers new internal one.
Thanks again guys!:p